PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22981_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 188aa    MW: 21560.9 Da    PI: 10.2663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22981_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-0679101123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++C++C+k F r  nL+ H r H
  cra_locus_22981_iso_1_len_649_ver_3  79 FVCEICNKGFQRDQNLQLHRRGH 101
                                          89*******************88 PP

2zf-C2H215.16.5e-05155177123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC++C+k++  +s+ k H +t+
  cra_locus_22981_iso_1_len_649_ver_3 155 WKCEKCSKRYAVQSDWKAHSKTC 177
                                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-678101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-778101No hitNo description
PfamPF121712.2E-579101IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355260120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-7150175No hitNo description
SMARTSM00355130155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAMMFPSLMS NSTSLSEDAN VSSITRVQDF CSLNPMLPTI SSNHLPQKIK KKRNLPGNPD  60
PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKENKKRAY  120
VCPEPTCLHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR  180
EYRCDCGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050479.11e-119Indeterminate(ID)-domain 12
SwissprotO227591e-95IDD12_ARATH; Protein indeterminate-domain 12
SwissprotQ9ZWA62e-94IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061DRD11e-119A0A061DRD1_THECC; Indeterminate(ID)-domain 12
STRINGPOPTR_0002s04880.11e-112(Populus trichocarpa)