PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22981_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 188aa MW: 21560.9 Da PI: 10.2663

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22981_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.9e-06	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_22981_iso_1_len_649_ver_3 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	15.1	6.5e-05	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ cra_locus_22981_iso_1_len_649_ver_3 155 WKCEKCSKRYAVQSDWKAHSKTC 177 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.6E-6	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.51E-7	78	101	No hit	No description
Pfam	PF12171	2.2E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	79	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	120	150	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-5	143	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.51E-7	150	175	No hit	No description
SMART	SM00355	130	155	175	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MAMMFPSLMS NSTSLSEDAN VSSITRVQDF CSLNPMLPTI SSNHLPQKIK KKRNLPGNPD 60 PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKENKKRAY 120 VCPEPTCLHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR 180 EYRCDCGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050479.1	1e-119	Indeterminate(ID)-domain 12
Swissprot	O22759	1e-95	IDD12_ARATH; Protein indeterminate-domain 12
Swissprot	Q9ZWA6	2e-94	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A061DRD1	1e-119	A0A061DRD1_THECC; Indeterminate(ID)-domain 12
STRING	POPTR_0002s04880.1	1e-112	(Populus trichocarpa)